Package index • CroptimizR

All functions
`AIC()`	Computes AIC for ordinary least squares
`AICc()`	Computes AICc for ordinary least squares
`BIC()`	Computes BIC for ordinary least squares
`likelihood_log_ciidn()` `likelihood_log_ciidn_corr()`	Likelihoods
`estim_param()`	main function for parameter estimation
`filter_obs()`	Filter observation list to exclude situations, variables or dates
`get_agmip_protocol_example()`	Get example AgMIP protocol Excel file
`get_agmip_protocol_template()`	Get AgMIP protocol Excel template
`get_obs_var()`	Get names of observed variables
`load_protocol_agmip()`	Load an AgMIP calibration protocol Excel file
`crit_ols()` `crit_wls()` `crit_log_cwss()` `crit_log_cwss_corr()`	Criteria to optimize
`plot_estimVSinit()`	Create plots of estimated versus initial values of the parameters
`plot_stats_bars()`	Plot bar charts of rRMSE and EF statistics by step and variable
`plot_stats_evolution()`	Plot Bias² and MSE evolution by calibration step as diagnostic of the AgMIP Protocol
`plot_valuesVSit()`	Create plots of parameters and criterion values per iteration or evaluation number
`plot_valuesVSit_2D()`	Create 2D plots of parameters values evolution per iteration or evaluation number
`post_treat_frequentist()`	Post-treat results of frequentist methods
`post_treat_multi_step()`	Post-treat results of multi-step procedure
`run_protocol_agmip()`	Automate the AgMIP Phase IV Calibration protocol
`summary_frequentist()`	Summarizes results of frequentist methods
`summary_multi_step()`	Summarizes results of multi-step procedure
`test_wrapper()`	Test model wrappers

Reference

All functions