Package index • SticsRFiles

Upgrade XML files to a next major version (i.e. from 9.2 to 10, or from 10 to 11) Functions for upgrading parameter files
`upgrade_workspace_xml()`	Upgrade a Javastics STICS xml workspace directory to a next major version
`upgrade_usms_xml()`	Upgrade a usms.xml file to a next major version
`upgrade_sols_xml()`	Upgrade a sols.xml file to a next major version
`upgrade_sta_xml()`	Upgrade _sta.xml file(s) to a next major version
`upgrade_ini_xml()`	Upgrade _ini.xml file(s) to a next major version
`upgrade_plt_xml()`	Upgrade _plt.xml file(s) to a next major version
`upgrade_tec_xml()`	Upgrade _tec.xml file(s) to a next major version
`upgrade_param_gen_xml()`	Upgrade a param_gen.xml file to a next major version
`upgrade_param_newform_xml()`	Upgrade a param_newform.xml file to a next major version
Manage JavaSTICS worskpace XML files Functions for manipulating workspaces
`extract_workspace()`	Extract an XML JavaSTICS workspace from a source workspace
Find information on parameters and variables
`get_param_info()`	Finding parameters information using partial search words
`is_stics_param()`	Search if a STICS parameter exist
`get_xml_files_param_df()`	Extracting a data.frame of parameters values for an xml file or a set of (whatever the xml file kind)
`get_var_info()`	Find STICS output variable names and description
`is_stics_var()`	Search if a STICS variable exist
`get_dev_stages()`	Get developmental stages from simulations
Generate JavaSTICS Input files (XML format) Functions for generating a set of XML files of a given type (from existing XML file or given template, plus a data.frame describing the parameters to modify for each file to create)
`read_params_table()`	Getting parameters data from tables files (Excel sheet, csv)
`gen_ini_xml()`	Generate STICS ini xml file(s) from a template or an input file
`gen_sols_xml()`	Generate STICS sols xml file from a template or an input file
`gen_sta_xml()`	Generate STICS sta xml file(s) from a template or an input file
`gen_tec_xml()`	Generate STICS tec xml file(s) from a template or an input file
`gen_usms_xml()`	Generate STICS usms xml file from a template or an input file
`gen_general_param_xml()`	Generate STICS general parameters xml file(s) from a template file according to a STICS version
Set values in JavaSTICS Input files (XML format)
`set_param_xml()`	Setting parameter values into xml files
Get values from JavaSTICS Input files (XML format)
`get_param_xml()`	Getting parameter values from xml files
`get_plants_nb()`	Getting plants number per usm for all usms or selected from a usm name vector
`get_files_list()`	Getting existing xml files path list per usm from an usms.xml file
`get_usms_list()`	Getting usms names list for an usms.xml file
`get_soils_list()`	Get the soil names for an usms.xml or sols.xml file
`get_cultivars_list()`	Get the cultivar names for an xml plant file (*_plt.xml)
`get_cultivars_param()`	Get the values of cultivar-specific parameters from an xml plant file (*_plt.xml)
Generate STICS Input files (Text format) Input parameters files, outputs definition files or observations files
`gen_usms_xml2txt()`	Generating one or several usms directories from a javastics workspace content
`convert_xml2txt()`	Transforming a STICS xml file into a text file
`force_param_values()`	Generates files to force parameters values in STICS simulations
`gen_varmod()`	Generating a var.mod type file
Set values in STICS Input files (Text format)
`set_param_txt()` `set_usm_txt()` `set_station_txt()` `set_ini_txt()` `set_general_txt()` `set_tmp_txt()` `set_plant_txt()` `set_tec_txt()` `set_soil_txt()`	Set (replace) STICS input file parameters
Get values from STICS Input files (Text format)
`get_param_txt()` `get_ini_txt()` `get_general_txt()` `get_tmp_txt()` `get_plant_txt()` `get_tec_txt()` `get_soil_txt()` `get_station_txt()` `get_usm_txt()`	Read STICS input parameters from text files
`get_plants_nb()`	Getting plants number per usm for all usms or selected from a usm name vector
`get_climate_txt()`	Read STICS input meteorology file
`get_varmod()`	Get desired STICS outputs
`get_lai_forcing()`	Getting LAI forcing for each usm
Get values from STICS Output files
`get_sim()`	Load and format STICS daily output file(s)
`get_report_results()`	Extracting data from the STICS report file
Manage observation files
`gen_obs()`	Generating observation data files from a data.frame
`get_obs()`	Read STICS observation files (*.obs)
Example data For files examples by STICS version
`get_examples_path()`	Getting examples files path attached to a STICS version for a given file type
`download_data()`	Download example USMs
`download_usm_xl()`	Downloading an Excel usms data file example into a directory
`download_usm_csv()`	Downloading a CSV usms data file example into a directory
Misc Miscellaneous helper functions
`get_stics_versions_compat()`	Get the compatible STICS versions
`is_mac()`	Evaluating if the OS is a Mac OS type
`is_unix()`	Evaluating if the OS is a unix like type
`is_windows()`	Evaluating if the OS is a windows type
`[`(<cropr_simulation>)	`[` method for `cropr_simulation`
`compute_day_from_date()`	Convert date into day number
`compute_date_from_day()`	Convert day number into date
`approx_vapour_pressure()`	Approximate vapour pressure

Reference

Upgrade XML files to a next major version (i.e. from 9.2 to 10, or from 10 to 11)

Manage JavaSTICS worskpace XML files

Find information on parameters and variables

Generate JavaSTICS Input files (XML format)

Set values in JavaSTICS Input files (XML format)

Get values from JavaSTICS Input files (XML format)

Generate STICS Input files (Text format)

Set values in STICS Input files (Text format)

Get values from STICS Input files (Text format)

Get values from STICS Output files

Manage observation files

Example data

Misc